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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7412213_7412529_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7412213 - 7412529
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGCAACTT
5'SS Class:
weak_major
3'SS Sequence:
GCAGCTACTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TCTCCCTGTATT
Flanking Amino Acid:
EQLLEKRHVTKEKENLTAEV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1
51.5
39.3
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
46.6
-0.1
1.7
47.4
40.1
Minor 5ss
32.6
-2
3.6
48.6
42.8
Minor BPS
54.7
0.23
1.8
74.36
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004256
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004404
7410062 - 7421003
10942