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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7412704_7416700_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7412704 - 7416700
Intron Length:
3997

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCAAATAT
5'SS Class:
weak_major
3'SS Sequence:
CGTTCATGTAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
ACAACATTAAAC
Flanking Amino Acid:
DIFTVLLYQGTLNLCITKQT
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.3
55.6
38.4
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
49.8
-0
1.7
57.2
42.5
Minor 5ss
25.8
-2.8
4
38.8
40.7
Minor BPS
49.5
-0
1.7
57.49
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004256
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004404
7410062 - 7421003
10942