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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7414561_7416700_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7414561 - 7416700
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGATTTA
5'SS Class:
major
3'SS Sequence:
CGTTCATGTAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
ACAACATTAAAC
Flanking Amino Acid:
LPNVFFLSLVALNLCITKQT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
73.5
33.5
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
49.8
-0
1.7
57.2
42.5
Minor 5ss
36.3
-1.6
3.3
48.5
47.7
Minor BPS
49.5
-0
1.7
57.49
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004256
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033237
7414518 - 7421218
6701