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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7421000_7421088_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7421000 - 7421088
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TGTATTTTACCT
Flanking Amino Acid:
IIKNKELTVTRGWQKDYRKD
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
88.4
0.86
0.7
85.7
28.6
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
59.5
0.38
1.6
76.69
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004256
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033237
7414518 - 7421218
6701