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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7432263_7432870_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7432263 - 7432870
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGCTAT
5'SS Class:
weak_major
3'SS Sequence:
ACACAGACTTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCATCATTAACA
Flanking Amino Acid:
YLTIQQLLEKSISAQEEQQK
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
67.6
40.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
54.3
0.1
1
48.5
39.3
Minor 5ss
47
-0.3
2.9
65.1
40.9
Minor BPS
72
0.69
1.6
77.7
38.7

Associated Gene:

Gene:
ITIH4
Ensembl Gene ID:
ENSAPLG00000004101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004224
7432064 - 7445166
13103