About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7433043_7433683_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7433043 - 7433683
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTA|GCAATGAGC
5'SS Class:
weak_major
3'SS Sequence:
AAGAAGTCTGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TAAGTCTAAAAA
Flanking Amino Acid:
GSEIVVSGKITVLMVSFLPL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.3
61.9
39.6
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
44.3
-0.3
1.7
40
43.7
Minor 5ss
24.2
-3
3.9
35.7
35.9
Minor BPS
48.1
-0.1
1.8
58.12
41.2

Associated Gene:

Gene:
ITIH4
Ensembl Gene ID:
ENSAPLG00000004101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004224
7432064 - 7445166
13103