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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7436344_7440261_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7436344 - 7440261
Intron Length:
3918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
AAGCTATAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CCTTCAAAAACA
Flanking Amino Acid:
RPQQLVKHFQAVLGRGLAPR
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
55.1
0.12
1.1
49.3
42.3
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
46.2
-0.2
2.2
61.12
44.7

Associated Gene:

Gene:
ITIH4
Ensembl Gene ID:
ENSAPLG00000004101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020078
7436269 - 7442085
5817