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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7437672_7438243_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7437672 - 7438243
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTGGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCTCCTTGGAAC
Flanking Amino Acid:
GSMAGRKIEQTREALLKILQ
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
84
30.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
64.4
0.32
1.1
60.5
39.2
Minor 5ss
47.4
-0.3
2.7
66.9
44.4
Minor BPS
49.2
-0
1.6
60.94
38.3

Associated Gene:

Gene:
ITIH4
Ensembl Gene ID:
ENSAPLG00000004101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004224
7432064 - 7445166
13103