About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7438361_7439834_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7438361 - 7439834
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTTTTTACCT
Flanking Amino Acid:
KQVATAGDIQIFNGYFVHYF
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.4
0.71
0.9
78.1
40.1
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
62.9
0.48
1.6
77.17
40

Associated Gene:

Gene:
ITIH4
Ensembl Gene ID:
ENSAPLG00000004101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004224
7432064 - 7445166
13103