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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7441683_7441947_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7441683 - 7441947
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCAAACAAA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTGTTTTTCT
Flanking Amino Acid:
KHAAKSTAQRHAVEIYSLRV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.4
0.06
1.3
52.7
44.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
29
-2.4
3.9
35.4
42.3
Minor BPS
41.5
-0.5
3.8
79.44
43

Associated Gene:

Gene:
ITIH4
Ensembl Gene ID:
ENSAPLG00000004101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020078
7436269 - 7442085
5817