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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7449251_7450102_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7449251 - 7450102
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTCCAAG
Flanking Amino Acid:
SKTYQVMKQCEQMGSAAPSI
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.2
0.72
0.9
82.8
32.6
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
46.1
-0.4
2.1
60.04
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024683
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048113
7449144 - 7452794
3651