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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7450224_7452785_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7450224 - 7452785
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTGTTTCATA
Flanking Amino Acid:
MSQPAPVKKKRPP
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.9
0.76
0.7
80.1
32
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
54.6
0.14
2.1
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024683
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048113
7449144 - 7452794
3651