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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7460008_7460910_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7460008 - 7460910
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TACTCAGAAACT
Flanking Amino Acid:
AASHEESESEILISADDEME
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.4
37.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
42.9
-0.8
2.5
50.7
40.2
Minor BPS
45.7
-0.2
2.5
70.02
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014904
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015535
7459891 - 7490210
30320