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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7461061_7461959_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7461061 - 7461959
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTCTTTTTACCA
Flanking Amino Acid:
VMLIVPFFVNALMFWVVDNF
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
75.9
39.5
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
86
0.81
0.8
81.3
35
Minor 5ss
38.1
-1.3
2.7
49.1
39.8
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014904
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015535
7459891 - 7490210
30320