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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7462038_7463002_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7462038 - 7463002
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
IVLLIPQWKEVALLNPIENP
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014904
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015535
7459891 - 7490210
30320