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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7463116_7468497_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7463116 - 7468497
Intron Length:
5382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATCTCTTGAACC
Flanking Amino Acid:
QWESLRFGEYGDPLQCCAWV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.7
0.8
0.8
81
29.4
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
68.4
0.56
1.4
73.52
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014904
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015535
7459891 - 7490210
30320