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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7468620_7472076_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7468620 - 7472076
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTTTACAT
Flanking Amino Acid:
SDLTEEDPCSLYLINFLLDA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
74.7
35.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
36.1
-1.6
3.5
59
45.5
Minor BPS
70.5
0.72
1.7
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014904
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015535
7459891 - 7490210
30320