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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7472173_7474001_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7472173 - 7474001
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TACCTCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTGTTTTTACCT
Flanking Amino Acid:
PKHERRPWRIWFLDTSKQAI
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.1
0.65
0.8
72.5
31.9
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
60.4
0.41
1.6
74.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014904
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015535
7459891 - 7490210
30320