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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7473_9553_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7473 - 9553
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTAGAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TTTCCTAGAAAA
Flanking Amino Acid:
VVTAAHCFNSKSVKQYIIHP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
58.6
0.19
1.2
61.2
38
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
49.4
-0
1.8
68.51
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026708
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035506
3068 - 11172
8105