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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_74936_75899_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74936 - 75899
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TACTAAGTAATG
Flanking Amino Acid:
TRKAGYLNARNKTGLVSSIW
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.5
35.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
37.3
-1.4
3.2
48.7
41.3
Minor BPS
42.6
-0.7
2.3
50.53
43.6

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053