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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7504065_7505511_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7504065 - 7505511
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATC
5'SS Class:
major
3'SS Sequence:
TCTCATTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
KNQELNSSDSVIINGKYCCP
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.4
38.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82
0.72
0.8
80
31.5
Minor 5ss
43
-0.8
3.1
60.3
44.4
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
SFMBT1
Ensembl Gene ID:
ENSAPLG00000003543
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003657
7496255 - 7525444
29190