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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7510495_7512154_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7510495 - 7512154
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGCTGTTAAACT
Flanking Amino Acid:
KNGLHLSPPPGYPGQDFDWA
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.4
0.48
0.9
65.3
41.1
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
50.8
0.1
2.1
71.8
45.5

Associated Gene:

Gene:
SFMBT1
Ensembl Gene ID:
ENSAPLG00000003543
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003657
7496255 - 7525444
29190