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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7517409_7517774_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7517409 - 7517774
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
CGTTTTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
TCGTTTTTCACT
Flanking Amino Acid:
QNKKILKVPEGIKDKIPDQE
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
72.6
0.51
0.9
67
39.2
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
59.1
0.37
1.8
74.34
43.4

Associated Gene:

Gene:
SFMBT1
Ensembl Gene ID:
ENSAPLG00000003543
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003657
7496255 - 7525444
29190