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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7518016_7522416_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7518016 - 7522416
Intron Length:
4401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GTGTGATGATCT
Flanking Amino Acid:
IAAPHGSFKHVDTSLQNGFA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
90.4
0.91
0.6
88.8
20.5
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
42.6
-0.4
2.2
62.92
46.5

Associated Gene:

Gene:
SFMBT1
Ensembl Gene ID:
ENSAPLG00000003543
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003657
7496255 - 7525444
29190