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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7522532_7525430_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7522532 - 7525430
Intron Length:
2899

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAACTGGA
5'SS Class:
major
3'SS Sequence:
TGCTGGATAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TAGGCCAAAACT
Flanking Amino Acid:
VKAEKCLASLPDAG
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
68.5
39.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
50.3
0.01
1.2
50.1
41.9
Minor 5ss
29
-2.4
4.1
39.8
44.1
Minor BPS
48.9
-0
2.1
69.91
46.5

Associated Gene:

Gene:
SFMBT1
Ensembl Gene ID:
ENSAPLG00000003543
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003657
7496255 - 7525444
29190