About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_76059_76161_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76059 - 76161
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTACTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATTACTTACTT
Flanking Amino Acid:
FLTNIGTSVQNVRREMECEI
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.7
0.6
0.8
75.2
34.3
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
64.2
0.52
1.8
82.21
39.2

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053