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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_76245_77576_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76245 - 77576
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CATGACTAAATT
Flanking Amino Acid:
EPLLGYMQAQISFFKMGSEN
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
84.6
0.78
0.9
90.3
22.8
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
48.4
-0
1.9
65.54
45.3

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053