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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_77724_78190_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77724 - 78190
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTAAA
5'SS Class:
major
3'SS Sequence:
TGTATCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
CTGTCTGTATCT
Flanking Amino Acid:
RLSKRRENEKIKAEVTEDVY
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
75.5
35.8
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
77
0.61
0.8
74.5
36.3
Minor 5ss
30.3
-2.3
2.6
34.1
41.3
Minor BPS
48.6
-0
2.3
70.84
46.6

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053