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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_78250_78744_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78250 - 78744
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
LKEVFQIASNDHDAAITRYS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
69.8
0.45
0.9
69
36.7
Minor 5ss
40.1
-1.1
3.4
52.2
46
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053