Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7859815_7864166_R

Intron Information:

Intron Rank:

149509

Intron Class:

major

Intron Phase:

Intron Coordinates:

7859815 - 7864166

Intron Length:

4352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

GATTTGTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

GTTTATTTGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

31.1

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

75.7

0.58

0.9

69.8

41.2

Minor 5ss

37.6

-1.4

2.8

48.3

41.8

Minor BPS

65.3

0.56

1.4

80.53

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033518

7859319 - 7868122

8804