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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7864290_7867385_R

Intron Information:

Intron Rank:
149510
Intron Class:
major
Intron Phase:
Intron Coordinates:
7864290 - 7867385
Intron Length:
3096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTCTAG
5'SS Class:
major
3'SS Sequence:
TTGTGATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.8
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77
0.61
0.9
70.5
40.2
Minor 5ss
42.2
-0.9
3.1
55.6
48.6
Minor BPS
67.5
0.53
1.5
74.76
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027950
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033518
7859319 - 7868122
8804