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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7905275_7908865_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7905275 - 7908865
Intron Length:
3591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
AIKMKEALTTERGKTLVQKK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
80.9
28.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.1
0.48
1
65.9
45.3
Minor 5ss
34.9
-1.7
3.4
46.2
49.1
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
PRKCD
Ensembl Gene ID:
ENSAPLG00000002693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002775
7905163 - 7932756
27594