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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7910311_7918747_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7910311 - 7918747
Intron Length:
8437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TCCTCCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
AGAGTTAAAAGT
Flanking Amino Acid:
MAVQYFLEDADCKQSMREEE
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
71.8
0.49
0.7
69.8
24.2
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
37.1
-0.9
1.9
47.74
39

Associated Gene:

Gene:
PRKCD
Ensembl Gene ID:
ENSAPLG00000002693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002775
7905163 - 7932756
27594