About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7923251_7924648_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7923251 - 7924648
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
ATATACTGAACT
Flanking Amino Acid:
DKKPKGGDTTGDNSQYDKLW
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
72.5
0.51
0.9
69
35.9
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
66
0.58
1.6
82.02
38.3

Associated Gene:

Gene:
PRKCD
Ensembl Gene ID:
ENSAPLG00000002693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002775
7905163 - 7932756
27594