About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7926344_7927866_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7926344 - 7927866
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTGATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATGTTTTGATCT
Flanking Amino Acid:
DKGRFDLYRATFYGAEIVCG
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.9
81.2
36.4
Minor 5ss
39.2
-1.2
3
49.5
40.1
Minor BPS
51.5
0.13
1.7
70.42
40.9

Associated Gene:

Gene:
PRKCD
Ensembl Gene ID:
ENSAPLG00000002693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002775
7905163 - 7932756
27594