Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7927930_7928949_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7927930 - 7928949

Intron Length:

1020

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACCAAA

U12 Branch Point Sequence:

ATCAGCAAAACC

Flanking Amino Acid:

QFLHSKGIIYRKFTGIVTDP

Intron Amino Acid Position:

484

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.7

26.7

Major BPS

48.4

-0.1

1.1

54.7

28.7

Major PPT

71.5

0.48

0.9

66.6

32.9

Minor 5ss

31.6

-2.1

2.6

37.4

Minor BPS

42.1

-0.6

2.2

54.19

43.5

Associated Gene:

Gene:

PRKCD

Ensembl Gene ID:

ENSAPLG00000002693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002775

7905163 - 7932756

27594