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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7931456_7932597_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7931456 - 7932597
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTGGA
5'SS Class:
major
3'SS Sequence:
CTGTTTAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
CTCTGTTTAACA
Flanking Amino Acid:
EVDPPFKPKVKSASDYNNFD
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
65.3
40.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
70.8
0.47
1
65.7
38.9
Minor 5ss
31.1
-2.2
3.3
37.7
42.2
Minor BPS
62.4
0.39
1.8
70.26
42.8

Associated Gene:

Gene:
PRKCD
Ensembl Gene ID:
ENSAPLG00000002693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002775
7905163 - 7932756
27594