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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7949338_7951022_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7949338 - 7951022
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCTTCTCCATC
Flanking Amino Acid:
KYRYRYPKGESYEDLVQRLE
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.5
0.55
0.8
65.8
34.8
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
47.3
-0.2
1.9
58.42
41.2

Associated Gene:

Gene:
PFKFB4
Ensembl Gene ID:
ENSAPLG00000015726
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047166
7942271 - 7969484
27214
ENSAPLT00000016414
7942271 - 7966191
23921