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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7957182_7959505_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7957182 - 7959505
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
PDNEEGLKIRKQCALAALND
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
100
1.24
0.5
100
0
Major PPT
75.7
0.58
1
79.8
32.2
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
PFKFB4
Ensembl Gene ID:
ENSAPLG00000015726
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047166
7942271 - 7969484
27214
ENSAPLT00000016414
7942271 - 7966191
23921