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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7962669_7969372_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7962669 - 7969372
Intron Length:
6704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TGGTAAATAACT
Flanking Amino Acid:
LPAGHSAQRGVCMTNCPTLI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
48.9
-0
2.1
72.54
43.3

Associated Gene:

Gene:
PFKFB4
Ensembl Gene ID:
ENSAPLG00000015726
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047166
7942271 - 7969484
27214