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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7994603_7994641_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7994603 - 7994641
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTGATTGT
5'SS Class:
major
3'SS Sequence:
GCTGTAAAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACC
Flanking Amino Acid:
SRRGTWLENALPA
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
59.6
44.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
55.6
0.13
1.1
49.5
42.1
Minor 5ss
25.9
-2.8
4
41.3
45.1
Minor BPS
65.2
0.46
1.5
75.69
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026922
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024438
7985087 - 7994651
9565