About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_80284_81150_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80284 - 81150
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTCCTAAAAT
Flanking Amino Acid:
LQQFSKVIDELSSCHAVLST
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
88.6
0.87
0.7
83.7
31.3
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
75.3
0.87
1.7
93.4
34.6

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053