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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_81223_82468_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81223 - 82468
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGCAA
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
SKLLKEYEKQHFPLGGDDEV
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
65.5
40.9
Major BPS
47.8
-0.1
1.3
57.3
39.4
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
43.9
-0.7
3.3
64.5
46.9
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053