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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_82529_84480_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82529 - 84480
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTTA
5'SS Class:
major
3'SS Sequence:
TTTTCTGAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
QAMHRVYDAQNELSAATHLT
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
68.5
38.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
70.5
0.46
1
71.6
38.4
Minor 5ss
39
-1.2
3.6
55.3
48.9
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053