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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8307766_8309424_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8307766 - 8309424
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
AMVLYIRKRKRLEKLRHQLM
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
65.1
0.34
1
60.8
35.2
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
C3orf18
Ensembl Gene ID:
ENSAPLG00000007147
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007413
8305125 - 8311093
5969