Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8309451_8310859_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8309451 - 8310859

Intron Length:

1409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

ACTGTTGTAATG

Flanking Amino Acid:

ITVIGLAVAMVLYIRKRKRL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

0.9

67.8

37.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

87.4

0.84

0.6

85.2

22.3

Minor 5ss

29.9

-2.3

3.3

35.1

42.4

Minor BPS

44.5

-0.5

47.81

Associated Gene:

Gene:

C3orf18

Ensembl Gene ID:

ENSAPLG00000007147

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007413

8305125 - 8311093

5969