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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8335907_8339294_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8335907 - 8339294
Intron Length:
3388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGCATCTAAATT
Flanking Amino Acid:
AVDLTKENVHRLQLQDRIHI
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
34.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87
0.83
0.7
81.2
30.2
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
53.4
0.18
1.7
68.53
42.9

Associated Gene:

Gene:
HEMK1
Ensembl Gene ID:
ENSAPLG00000007163
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007433
8314885 - 8345152
30268