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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8341926_8343728_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8341926 - 8343728
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TCTACTTCTACA
Flanking Amino Acid:
ALAPSLLKDSGSVFLEVDPS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
81.4
0.71
0.9
77.7
36.7
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
49.3
-0
1.9
64.16
42

Associated Gene:

Gene:
HEMK1
Ensembl Gene ID:
ENSAPLG00000007163
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007433
8314885 - 8345152
30268