Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8343843_8345115_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8343843 - 8345115

Intron Length:

1273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTTTCCCCACAG

Flanking Amino Acid:

LRAVHKDFCGKPRFLHIQKQ

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

77.7

33.3

Major BPS

79.7

0.74

79.6

35.6

Major PPT

82.2

0.73

0.7

76.7

25.5

Minor 5ss

40.1

-1.1

2.9

49.5

41.1

Minor BPS

45.8

-0.4

2.2

45.2

Associated Gene:

Gene:

HEMK1

Ensembl Gene ID:

ENSAPLG00000007163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007433

8314885 - 8345152

30268