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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8458803_8459632_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8458803 - 8459632
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGACC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TGTTCTTTGTTT
Flanking Amino Acid:
GKRCLLIVMECLEGGELFSR
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
64.9
39
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
39.8
-1.1
3
49.4
41.2
Minor BPS
47
-0.1
3.4
79.17
37.6

Associated Gene:

Gene:
MAPKAPK3
Ensembl Gene ID:
ENSAPLG00000016332
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038489
8424502 - 8472708
48207
ENSAPLT00000033285
8366903 - 8472708
105806
ENSAPLT00000017050
8424898 - 8472708
47811